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Preheat oven to 350 degrees. Generously spray two muffin tins with non stick cooking spray.
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In a large bowl, combine whole wheat flour, baking soda, cinnamon, salt, and ground flax seed, and brown sugar.
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In a separate bowl, mix together eggs, honey, oil, applesauce, orange zest and juice, and vanilla.
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Add wet ingredients to dry ingredients and mix until combined.
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Stir in dried cherries, raisins, walnuts, sunflower seeds, shredded carrots, and shredded apple.
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Spoon batter into muffin cups half way full and top with chopped walnuts.
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Bake muffins for 18-20 minutes or until a knife is inserted and comes out clean.
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Cool for 5 minutes that flip pan over to remove. Cool completely.
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Store muffins in an airtight container in the refrigerator for up to 4 days or wrap in saran wrap and freeze for up to 1 month. Defrost completely before eating.