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Preheat oven to 350 degrees. Generously spray a muffin tin with non-stick cooking spray or line with cupcake liners.
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In a large bowl, whisk together cocoa powder, baking powder, flour, salt, and sugar.
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Stir in eggs, cooled melted butter, and vanilla.
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Stir in hot coffee or water until batter is smooth.
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Scoop brownie batter into muffin tins filling them ½ full. Set aside.
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To make the cream cheese topping beat cream cheese, sugar, eggs, vanilla, and flour until smooth.
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Scoop 1 tablespoon of cream cheese topping onto each brownie batter cup.
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Swirl with a knife.
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Top with chocolate chunks or chips.
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Bake muffins at 350 degrees for 22-25 minutes.
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Cool completely before serving.